run_metadata: 63044
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63044 | SRR13613238 | SRX10006652 | SRS8175777 | SRP304325 | PRJNA695802 | zebrafish heart RNA Sequencing | PRJNA695802 | Other | To examine if the MTO1 deficiency changed the gene expression profile for thedevelopment of hypertrophic cardiomyopathy and the deficiency of complex I and IV weperformed mRNA sequencing on hearts of WT and mto1 / zebrafish at the age of 4 month 6 month. | zeMTO1 CKH | strain:zebrafish|isolate:missing|breed:not collected|cultivar:not collected|ecotype:not collected|age:6 month|dev stage:adult|sex:pooled male and female|tissue:Heart|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: adult heart of wildtypeWT zebrafish | ZQH 2 | ZQH 2 | RNA seq libraries construction and sequencing were performed by the Novogene Bioinformatics Institute Beijing China | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP304325 | M_H_WT1_1.fq.gz M_H_WT1_2.fq.gz M_H_WT2_1.fq.gz M_H_WT2_2.fq.gz M_H_WT3_1.fq.gz M_H_WT3_2.fq.gz | fastq fastq fastq fastq fastq fastq | 28961958300.0 | 96539861.0 | M H WT1 1.fq.gz | 0:150 1:150 | A:8024887044;C:6485327681;G:6568403520;T:7882993794;N:346261 | 150 | 150 | 8024887044 | 6485327681 | 6568403520 | 7882993794 | 346261 | SRX10006652 | SRS8175777 | SRA1190610 | Zhejiang University|Institute of Genetics, Zhejiang University School | Zhejiang University | 2 | 0.92189 | 0.92108 | 0.07211 | 0.07199 | 0.77727 | 0.77735 | 0.51037 | 0.51129 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-02-02 | Adult | Adult | Heart | Cardiovascular System |