run_metadata: 62984
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62984 | SRR13559188 | SRX9957467 | SRS8131851 | SRP303451 | PRJNA695140 | Zebrafish caloric restriction | PRJNA695140 | Other | Using Zebrafish Danio rerio as a model organism for aquaculture we investigated the impact of caloric restriction CR on growth gut morphology and gene expression. | 85% feeding group replicate 3 | CR 85perc 3 | strain:AB Strain|dev stage:3 mpf|sex:pooled male and female|tissue:Intestine|treatment:85% feeding|replicate:biological replicate 3|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: 85% feeding | CR 85perc 3 | CR 85perc 3 | Stranded Total RNA Sample Preparation kit using Low Sample LS Protocol. Ribosomal RNA was depleted using Ribo Zero Gold kit. | RNA-Seq | TRANSCRIPTOMIC | other | SINGLE | ILLUMINA | NextSeq 500 | SRP303451 | CR_85perc_3_S7_R1_001.fastq.gz | fastq | 1843871333.0 | 24411281.0 | CR 85perc 3 S7 R1 001.fastq.gz | 0:75.53 1:0 | A:441643488;C:487987766;G:446957305;T:467206076;N:76698 | 75 | 0 | 441643488 | 487987766 | 446957305 | 467206076 | 76698 | SRX9957467 | SRS8131851 | SRA1188331 | Temasek Life Sciences Laboratory|Reproductive Genomics Group | Temasek Life Sciences Laboratory | 1 | 0.91984 | 0.25275 | 0.77565 | 0.65163 | 74 | B | usable mapping rate | illumina | nextseq | unknown | rrna_depletion | ribozero | bulk | unknown | unknown | Singapore | 2021-01-27 | Adult | Adult | Gut | Digestive System |