run_metadata: 62855
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62855 | SRR13440557 | SRX9853977 | SRS8035408 | SRP301838 | PRJNA691414 | Transcriptomic analysis of GD treated zebrafish liver | PRJNA691414 | Other | Globin digest is a bioactive oligopeptide derived from porcine hemoglobin proteins. We orally administrated GD to diet induced zebrafish fish and performed RNA seq using the liver of zebrafish with or without xxx treatment. | Zebrafish liver from AB strain | GD DIO Zebrafish | strain:AB|age:3 month|sex:female|tissue:liver|disease:Obesity|BioSampleModel:Model organism or animal | RNA seq of Danio rerio: adult female liver | DIO GD 3 | DIO GD 3 | DIO with GD treatment | RNA-Seq | TRANSCRIPTOMIC | PCR | SINGLE | ION_TORRENT | Ion Torrent Proton | SRP301838 | DIO_GD-3 | fastq | 2209140756.0 | 21626130.0 | DIO GD 3 | 0:102.15 | A:583812333;C:487262915;G:584943625;T:553121883;N:0 | 102 | 583812333 | 487262915 | 584943625 | 553121883 | 0 | SRX9853977 | SRS8035408 | SRA1184195 | Mie University|Graduate School of Regional Innovation Studies | Mie University | 1 | 0.63225 | 0.1658 | 0.86379 | 0.37214 | 92 | B | usable mapping rate | ion_torrent | ion_torrent | unknown | random_priming | unknown | bulk | unknown | unknown | Japan | 2021-01-14 | Adult | Adult | Liver | Liver and Biliary System |