run_metadata: 62784
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62784 | SRR13376243 | SRX9799591 | SRS7984244 | SRP300743 | PRJNA690234 | Expression of zebrafish endogenous retroviruses in response to SVCV infection | PRJNA690234 | Other | Shed Light on Zebrafish Endogenous Retrovirus like elements: Survey of the Composition Phylogeny and Expression | SVCV Spleen 2 | strain:AB|dev stage:adult|sex:male and female|tissue:spleen|treatment:injected with SVCV|replicate:replicate = replicate 2|BioSampleModel:Model organism or animal | RNA seq of zebrafish: spleen: SVCV | T38 | T38 | adult zebrafish were injected with SVCV RNA were extracted from spleen at xxxhpi | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP300743 | SVCV_Spleen_2.R1.fastq.gz SVCV_Spleen_2.R2.fastq.gz | fastq fastq | 7381144250.0 | 24440875.0 | SVCV Spleen 2.R1.fastq.gz | 0:151 1:151 | A:1990654513;C:1680305155;G:1777929120;T:1932136628;N:118834 | 151 | 151 | 1990654513 | 1680305155 | 1777929120 | 1932136628 | 118834 | SRX9799591 | SRS7984244 | SRA1181241 | Zhejiang University|College of life science | Zhejiang University | 2 | 0.91045 | 0.90637 | 0.06763 | 0.06729 | 0.69828 | 0.69867 | 0.48254 | 0.48277 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2021-01-07 | Adult | Adult | Spleen | Hematopoietic System |