run_metadata: 62776
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62776 | SRR13376235 | SRX9799599 | SRS7984252 | SRP300743 | PRJNA690234 | Expression of zebrafish endogenous retroviruses in response to SVCV infection | PRJNA690234 | Other | Shed Light on Zebrafish Endogenous Retrovirus like elements: Survey of the Composition Phylogeny and Expression | Control Spleen 3 | strain:AB|dev stage:adult|sex:male and female|tissue:spleen|treatment:injected with PBS|replicate:replicate = replicate 3|BioSampleModel:Model organism or animal | RNA seq of zebrafish: spleen: PBS | T30 | T30 | adult zebrafish were injected with PBS RNA were extracted from spleen at xxxhpi | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP300743 | Control_Spleen_3.R1.fastq.gz Control_Spleen_3.R2.fastq.gz | fastq fastq | 7550432766.0 | 25001433.0 | Control Spleen 3.R1.fastq.gz | 0:151 1:151 | A:2018422580;C:1742507793;G:1796580720;T:1992799700;N:121973 | 151 | 151 | 2018422580 | 1742507793 | 1796580720 | 1992799700 | 121973 | SRX9799599 | SRS7984252 | SRA1181241 | Zhejiang University|College of life science | Zhejiang University | 2 | 0.92068 | 0.92127 | 0.06337 | 0.06399 | 0.68874 | 0.68822 | 0.47658 | 0.47523 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2021-01-07 | Adult | Adult | Spleen | Hematopoietic System |