run_metadata: 62768
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62768 | SRR13374853 | SRX9798196 | SRS7982913 | SRP300698 | PRJNA690124 | Investigation of Zebrafish Endogenous Retroviruses | PRJNA690124 | Other | Shed Light on Zebrafish Endogenous Retrovirus like elements: Survey of the Composition Phylogeny and Expression | Spleen2 | strain:AB|dev stage:adult|sex:male and female|tissue:spleen|health state:health|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal | RNA seq of zebrafish: adult: spleen | T20 | T20 | RNA extracted from tissue | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP300698 | Spleen2.R1.fastq.gz Spleen2.R2.fastq.gz | fastq fastq | 6804474646.0 | 22531373.0 | Spleen2.R1.fastq.gz | 0:151 1:151 | A:1776770612;C:1626287076;G:1682882382;T:1718492267;N:42309 | 151 | 151 | 1776770612 | 1626287076 | 1682882382 | 1718492267 | 42309 | SRX9798196 | SRS7982913 | SRA1181129 | Zhejiang University|College of life science | Zhejiang University | 2 | 0.93567 | 0.88963 | 0.04922 | 0.04623 | 0.74257 | 0.75041 | 0.50033 | 0.4547 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2021-01-06 | Adult | Adult | Spleen | Hematopoietic System |