run_metadata: 62766
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62766 | SRR13374851 | SRX9798198 | SRS7982915 | SRP300698 | PRJNA690124 | Investigation of Zebrafish Endogenous Retroviruses | PRJNA690124 | Other | Shed Light on Zebrafish Endogenous Retrovirus like elements: Survey of the Composition Phylogeny and Expression | Spleen3 | strain:AB|dev stage:adult|sex:male and female|tissue:spleen|health state:health|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal | RNA seq of zebrafish: adult: spleen | T21 | T21 | RNA extracted from tissue | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP300698 | Spleen3.R1.fastq.gz Spleen3.R2.fastq.gz | fastq fastq | 6944249608.0 | 22994204.0 | Spleen3.R1.fastq.gz | 0:151 1:151 | A:1791694656;C:1670042370;G:1729203945;T:1753264854;N:43783 | 151 | 151 | 1791694656 | 1670042370 | 1729203945 | 1753264854 | 43783 | SRX9798198 | SRS7982915 | SRA1181129 | Zhejiang University|College of life science | Zhejiang University | 2 | 0.94268 | 0.895 | 0.04275 | 0.0401 | 0.75716 | 0.76414 | 0.44872 | 0.45146 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2021-01-06 | Adult | Adult | Spleen | Hematopoietic System |