run_metadata: 62703
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62703 | SRR13327933 | SRX9755043 | SRS7944753 | SRP299775 | PRJNA688655 | RNA Seq of Danio rerio: kidney and headkidney from wild type and congenitally asplenic zebrafish | PRJNA688655 | Other | WT 0h k3 | WT 0h k3 | strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:8|dev stage:mission|sex:not collected|tissue:kidney and headkidney|biomaterial provider:Southwest University China|replicate:Biological replicate 3|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: kidney and headkidney from wild type and congenitally asplenic zebrafish | WT 0h k3 | WT k3 | other | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | HiSeq X Ten | SRP299775 | Mut_0h_k3.raw_1.fastq.gz Mut_0h_k3.raw_2.fastq.gz | fastq fastq | 5891495100.0 | 19638317.0 | Mut 0h k3.raw 1.fastq.gz | 0:150 1:150 | A:1626936306;C:1303639063;G:1370950045;T:1589948552;N:21134 | 150 | 150 | 1626936306 | 1303639063 | 1370950045 | 1589948552 | 21134 | SRX9755043 | SRS7944753 | SRA1178968 | southwest university|college of fisheries | southwest university | 2 | 0.93117 | 0.93006 | 0.09742 | 0.09724 | 0.70396 | 0.7041 | 0.53898 | 0.53936 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-12-30 | Undetermined | Undetermined | Kidney | Renal System |