run_metadata: 62699

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
62699	SRR13320609	SRX9748089	SRS7936232	SRP299308	PRJNA688414	WT and oxr1b mutant zebrafish sequencing	PRJNA688414	Other	To clarify the role of oxr1b in regulating genome wide gene expression during early oxidative stress response the comparative transcriptome analysis of WT and oxr1b / mutant zebrafish larvae were performed by RNA seq.				danio rerio	zebrafish larval		strain:AB line\|isolate:n1\|breed:wt type and mutant\|cultivar:no\|ecotype:Chongqing\|age:5 dpf\|dev stage:larval stage\|sex:not collected\|tissue:whole fish\|BioSampleModel:Model organism or animal									Transcriptome Analysis the Early Molecular Response of Oxr1b / Mutant Zebrafish Larvae to Oxidative Stress by RNA Seq	MJ20201107019	MJ20201107019	The total RNA samples were isolated from WT and oxr1b / mutant zebrafish larvae by the RNAiso Plus kit			RNA-Seq	TRANSCRIPTOMIC	RANDOM PCR	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP299308			WT_H2O2.R1.fastq.gz WT_H2O2.R2.fastq.gz WT_ctrl.R1.fastq.gz WT_ctrl.R2.fastq.gz moxr1b_H2O2.R1.fastq.gz moxr1b_H2O2.R2.fastq.gz moxr1b_ctrl.R1.fastq.gz moxr1b_ctrl.R2.fastq.gz	fastq fastq fastq fastq fastq fastq fastq fastq	30986524572.0	102604386.0	WT H2O2.R1.fastq.gz	0:151 1:151	A:8204027517;C:7238523175;G:7419111448;T:8124456513;N:405919	151	151			8204027517	7238523175	7419111448	8124456513	405919	SRX9748089	SRS7936232	SRA1178651	Southwest University\|College of Fisheries	Southwest University	2	0.94082	0.91236	0.08994	0.08673	0.65997	0.66478	0.48105	0.48139	151	151	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown		China	2020-12-29	Larval	Larval	Whole Organism	All anatomical structures