run_metadata: 62688
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62688 | SRR13319606 | SRX9747095 | SRS7934719 | SRP299583 | PRJNA688352 | Transcriptome Sequencing of Kidneys in adult wild type and congenitally asplenic zebrafish post injected with inactivated A. hydrophila cells | PRJNA688352 | Other | A transcriptome analysis of Kidneys in adult wild type and congenitally asplenic zebrafish post injected with inactivated A. hydrophila cells | WT 10d k3 | WT 10d k3 | strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:14 month|sex:not collected|tissue:kidney and headkidney|biomaterial provider:Southwest University China|replicate:Biological replicate 3|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: kidney and headkidney from wild type and congenitally asplenic zebrafish post vaccination | WT 10d k3 | WT 10d k3 | other | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | HiSeq X Ten | SRP299583 | WT_10d_k3.raw_1.fastq.gz WT_10d_k3.raw_2.fastq.gz | fastq fastq | 7159590600.0 | 23865302.0 | WT 10d k3.raw 1.fastq.gz | 0:150 1:150 | A:1984034638;C:1574065265;G:1674336416;T:1927009990;N:144291 | 150 | 150 | 1984034638 | 1574065265 | 1674336416 | 1927009990 | 144291 | SRX9747095 | SRS7934719 | SRA1178602 | southwest university|college of fisheries | southwest university | 2 | 0.92946 | 0.92803 | 0.08386 | 0.08381 | 0.71052 | 0.71074 | 0.51146 | 0.51825 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-12-28 | Adult | Adult | Kidney | Renal System |