run_metadata: 62680
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62680 | SRR13311745 | SRX9739651 | SRS7936985 | SRP299375 | PRJNA688157 | Single cell RNA analysis of trunk neural crest cells in zebrafish | GSE163907 | Other | Single cell RNA seq data of tgsox10:GFP cells from 20 hpf 24 hpf zebrafish. Sequenced with 10x genomics. Overall design: tgsox10:GFP cells were isolated by FACS from dissociated trunks of 20 24hpf zebrafish and submitted to 10x Sequencing | pubmed:34397384 | tgsox10:GFP | GSM4990514 | source name:zebrafish trunk tgsox10:GFP positive cells|genotype:tgsox10:GFP ba2|tissue:trunk neural crest cells|developmental stage:24 hpf | tgsox10:GFP | cellranger v3.2 seurat v3.2.2 Genome build: GRCz11 Supplementary files format and content: features barcodes counts matrix for scRNAseq Supplementary files format and content: Cluster assignments | zebrafish trunk tgsox10:GFP positive cells | tgsox10:GFP cells were isolated by FACS from dissociated trunks of 20 24hpf zebrafish and submitted to 10x Sequencing | genotype:tgsox10:GFP ba2|tissue:trunk neural crest cells|developmental stage:24 hpf | GSM4990514 | GSM4990514: tgsox10:GFP; Danio rerio; RNA Seq | GSM4990514 | 1 | tgsox10:GFP cells were isolated by FACS from dissociated trunks of 20 24hpf zebrafish and submitted to 10x Sequencing | GEO Accession:GSM4990514 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP299375 | Cut_Sox10_GFP_24hpf_12142018_1_S21_L002_R1_001.fastq.gz Cut_Sox10_GFP_24hpf_12142018_1_S21_L002_R2_001.fastq.gz | fastq fastq | 23453047207.0 | 77864343.0 | GSM4990514 r2 | 0:150.58 1:150.62 | A:5353428042;C:4272250712;G:7801502473;T:6025426926;N:439054 | 150 | 150 | 5353428042 | 4272250712 | 7801502473 | 6025426926 | 439054 | SRX9739651 | SRS7936985 | SRA1178122 | GEO | Artinger Laboratory, Craniofacial Biology, University of Colorado Denver | Anschutz | 2 | 0.0 | 0.90571 | 0.0 | 0.11445 | 1.0 | 0.80326 | 0.51014 | 149 | 151 | T | B | mate1 technical by mapping diff | illumina | novaseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_droplet | 10x | United States | 2020-12-28 | Pharyngula | Embryo | Multi-tissue | Multi-system |