run_metadata: 62623
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62623 | SRR13249634 | SRX9681302 | SRS7879152 | SRP297849 | PRJNA684994 | Invenstigation the aflatoxin B1 treatment in zebrafish embryo model system | PRJNA684994 | Whole Genome Sequencing | The present study aimed to investigate the direct adverse effects of embryonic exposure to AFB1 at relatively low sublethal <LC10 concentrations on zebrafish embryos and larvae integrating toxicological transcriptomic metabolomic and immunological methodologies. | AFB1 treated biological replicate 1 | aflatoxin B1 treated replicate 1 | AFB1 replicate 1 | strain:wild type AB|dev stage:120 hpf applicable|tissue:full embryo|biomaterial provider:Department of Agriculture Szent Istvn University Gdll Hungary|treatment:AFB1 treated rep1|BioSampleModel:Model organism or animal | aflatoxin B1 treated replicate 1 | AFB1 1 | AFB1 1 | NEBNext Ulrta II RNA library Prep with Sample Purification Beads | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | NextSeq 500 | SRP297849 | AFB1-1.fastq.gz | fastq | 1321629789.0 | 17504578.0 | AFB1 1.fastq.gz | 0:75.50 1:0 | A:355765104;C:301892812;G:307199002;T:356721809;N:51062 | 75 | 0 | 355765104 | 301892812 | 307199002 | 356721809 | 51062 | SRX9681302 | SRS7879152 | SRA1170831 | University of Debrecen|Biochemistry and Molecular Biology | University of Debrecen | 1 | 0.93597 | 0.13224 | 0.66484 | 0.46983 | 75 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | nebnext | bulk | unknown | unknown | Hungary | 2020-12-18 | Larval | Larval | Embryo Imprecise | All anatomical structures |