run_metadata: 62618
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62618 | SRR13249629 | SRX9681307 | SRS7879157 | SRP297849 | PRJNA684994 | Invenstigation the aflatoxin B1 treatment in zebrafish embryo model system | PRJNA684994 | Whole Genome Sequencing | The present study aimed to investigate the direct adverse effects of embryonic exposure to AFB1 at relatively low sublethal <LC10 concentrations on zebrafish embryos and larvae integrating toxicological transcriptomic metabolomic and immunological methodologies. | DMSO treated biological replicate 2 | DMSO treated replicate 2 | D replicate 2 | strain:wild type AB|dev stage:120 hpf applicable|tissue:full embryo|biomaterial provider:Department of Agriculture Szent Istvn University Gdll Hungary|treatment:DMSO treated rep2|BioSampleModel:Model organism or animal | DMSO treated replicate 2 | D 2 | D 2 | NEBNext Ulrta II RNA library Prep with Sample Purification Beads | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | NextSeq 500 | SRP297849 | D-2.fastq.gz | fastq | 1277977153.0 | 16927443.0 | D 2.fastq.gz | 0:75.50 1:0 | A:347672906;C:288665019;G:291595080;T:349962590;N:81558 | 75 | 0 | 347672906 | 288665019 | 291595080 | 349962590 | 81558 | SRX9681307 | SRS7879157 | SRA1170831 | University of Debrecen|Biochemistry and Molecular Biology | University of Debrecen | 1 | 0.93355 | 0.13694 | 0.66421 | 0.47476 | 76 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | nebnext | bulk | unknown | unknown | Hungary | 2020-12-18 | Larval | Larval | Embryo Imprecise | All anatomical structures |