run_metadata: 62475
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62475 | SRR13221789 | SRX9654237 | SRS7853434 | SRP297176 | PRJNA683669 | Transcriptional regulation of AKO and LKO in zebrafish. | PRJNA683669 | Other | The RNA for sequencing was collected from six RNA samples per treatment WT/AKO and WT/LKO male zebrafish. | LKO2 | breed:zebrafish|age:4 mpf|sex:male|tissue:whole fish|genotype:LAL KO|replicate:biological replicate 2|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio | LKO2 | LKO2 | Transcriptome sequencing was conducted by using Illumina HiSeq 2500 according to the manufacturer's instructions. post filtering out low quality reads the remaining clean reads were assembled and mapped to the zebrafish reference genome. | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP297176 | LKO2_R1.fastq.gz LKO2_R2.fastq.gz | fastq fastq | 6036272700.0 | 20120909.0 | LKO2 R1.fastq.gz | 0:150 1:150 | A:1601206536;C:1418087701;G:1426655325;T:1590179237;N:143901 | 150 | 150 | 1601206536 | 1418087701 | 1426655325 | 1590179237 | 143901 | SRX9654237 | SRS7853434 | SRA1169092 | LANEH|School of Life Sciences, East China Normal Univers | LANEH | 2 | 0.94664 | 0.94241 | 0.07651 | 0.07615 | 0.6608 | 0.66567 | 0.45863 | 0.4577 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Unknown | 2020-12-09 | Adult | Adult | Whole Organism | All anatomical structures |