run_metadata: 62395
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62395 | SRR13190623 | SRX9624975 | SRS7826170 | SRP295652 | PRJNA682251 | microbiota in gastrointestinal tract of zebrafish | PRJNA682251 | Other | Effects of TCS on microbiota of gastrointestinal tract in zebrafish | mi co 3c | mi co 3c | strain:wild type strain AB|isolate:gastrointestinal tract|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:120 dpf|dev stage:120 dpf|sex:female|tissue:gastrointestinal tract|BioSampleModel:Model organism or animal | 16SrRNA Seq of zebrafish | mi co 3c | mi co 3c | DNA bacorde | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP295652 | mi-co-3c_S162_L001_R1_001.fastq.gz mi-co-3c_S162_L001_R2_001.fastq.gz | fastq fastq | 33933284.0 | 56451.0 | mi co 3c S162 L001 R1 001.fastq.gz | 0:300.59 1:300.52 | A:8043022;C:8947879;G:8495218;T:8442986;N:4179 | 300 | 300 | 8043022 | 8947879 | 8495218 | 8442986 | 4179 | SRX9624975 | SRS7826170 | SRA1166526 | Xinhua Hospital, Shanghai Jiao Tong university school of medicine|Ministry of Education and Shanghai Key Laboratory | Xinhua Hospital, Shanghai Jiao Tong university school of medicine | 2 | 0.00016 | 0.00019 | 0.00011 | 0.00016 | 0.99995 | 0.99997 | 0.5 | 1.0 | 301 | 301 | T | T | mates < 9% mapping rate | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-12-03 | Adult | Adult | Gut | Digestive System |