run_metadata: 62340
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62340 | SRR13190568 | SRX9625030 | SRS7826227 | SRP295652 | PRJNA682251 | microbiota in gastrointestinal tract of zebrafish | PRJNA682251 | Other | Effects of TCS on microbiota of gastrointestinal tract in zebrafish | mi dmso 1c | mi dmso 1c | strain:wild type strain AB|isolate:gastrointestinal tract|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:120 dpf|dev stage:120 dpf|sex:female|tissue:gastrointestinal tract|BioSampleModel:Model organism or animal | 16SrRNA Seq of zebrafish | mi dmso 1c | mi dmso 1c | DNA bacorde | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP295652 | mi-DMSO-1c_S167_L001_R1_001.fastq.gz mi-DMSO-1c_S167_L001_R2_001.fastq.gz | fastq fastq | 31956049.0 | 53168.0 | mi DMSO 1c S167 L001 R1 001.fastq.gz | 0:300.51 1:300.53 | A:7523962;C:8453666;G:8037794;T:7937020;N:3607 | 300 | 300 | 7523962 | 8453666 | 8037794 | 7937020 | 3607 | SRX9625030 | SRS7826227 | SRA1166526 | Xinhua Hospital, Shanghai Jiao Tong university school of medicine|Ministry of Education and Shanghai Key Laboratory | Xinhua Hospital, Shanghai Jiao Tong university school of medicine | 2 | 0.00023 | 0.00024 | 0.00012 | 0.00018 | 0.99989 | 0.99995 | 0.6 | 0.5 | 301 | 301 | T | T | mates < 9% mapping rate | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-12-03 | Adult | Adult | Gut | Digestive System |