run_metadata: 62314
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62314 | SRR13190542 | SRX9625056 | SRS7826252 | SRP295652 | PRJNA682251 | microbiota in gastrointestinal tract of zebrafish | PRJNA682251 | Other | Effects of TCS on microbiota of gastrointestinal tract in zebrafish | C03 2M | C03 2M | strain:wild type strain AB|isolate:gastrointestinal tract|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4 month|dev stage:4 month|sex:male|tissue:gastrointestinal tract|BioSampleModel:Model organism or animal | 16SrRNA Seq of zebrafish | C03 2M | C03 2M | DNA bacorde | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP295652 | C03_2M_E37_227_R1.fastq.gz C03_2M_E37_227_R2.fastq.gz | fastq fastq | 42783538.0 | 71069.0 | C03 2M E37 227 R1.fastq.gz | 0:301 1:301 | A:9765039;C:11749187;G:11137288;T:10131989;N:35 | 301 | 301 | 9765039 | 11749187 | 11137288 | 10131989 | 35 | SRX9625056 | SRS7826252 | SRA1166526 | Xinhua Hospital, Shanghai Jiao Tong university school of medicine|Ministry of Education and Shanghai Key Laboratory | Xinhua Hospital, Shanghai Jiao Tong university school of medicine | 2 | 2e-05 | 0.0 | 0.0 | 0.0 | 0.99997 | 1.0 | 0.0 | 301 | 301 | T | T | mates < 9% mapping rate | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-12-03 | Adult | Adult | Gut | Digestive System |