run_metadata: 61846
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61846 | SRR13005704 | SRX9456906 | SRS7669366 | SRP291566 | PRJNA675331 | Transcriptome of liver of zebrafish in freshwater microcosm | PRJNA675331 | Other | Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome | D7T0.01 3T | strain:Danio rerio6|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal | transcriptome | D7T0.01 3T | D7T0.01 3T | liver transcriptome | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | HiSeq X Ten | SRP291566 | LN1-200511-P3-LR200509-0006-GTACACCT_BKDL202576219-1a-GA03_1.fq.gz LN1-200511-P3-LR200509-0006-GTACACCT_BKDL202576219-1a-GA03_2.fq.gz | fastq fastq | 7810905000.0 | 26036350.0 | LN1 200511 P3 LR200509 0006 GTACACCT BKDL202576219 1a GA03 1.fq.gz | 0:150 1:150 | A:2087687846;C:1800905915;G:1837647496;T:2084538464;N:125279 | 150 | 150 | 2087687846 | 1800905915 | 1837647496 | 2084538464 | 125279 | SRX9456906 | SRS7669366 | SRA1155868 | Zhejiang University of Technology|College of Environment | Zhejiang University of Technology | 2 | 0.93771 | 0.93852 | 0.05587 | 0.05639 | 0.79738 | 0.79857 | 0.49601 | 0.49792 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-11-08 | Adult | Adult | Liver | Liver and Biliary System |