run_metadata: 61845
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61845 | SRR13005703 | SRX9456907 | SRS7669367 | SRP291566 | PRJNA675331 | Transcriptome of liver of zebrafish in freshwater microcosm | PRJNA675331 | Other | Metagenomic insights into the effects of residual chlorine in freshwater on the microbial community and antibiotic resistome | D7T0.1 1T | strain:Danio rerio7|age:6 mpf|dev stage:adult|sex:male|tissue:liver|BioSampleModel:Model organism or animal | transcriptome | D7T0.1 1T | D7T0.1 1T | liver transcriptome | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | HiSeq X Ten | SRP291566 | LN1-200511-P3-LR200509-0007-TCGGATTC_BKDL202576219-1a-AK692_1.fq.gz LN1-200511-P3-LR200509-0007-TCGGATTC_BKDL202576219-1a-AK692_2.fq.gz | fastq fastq | 9334683900.0 | 31115613.0 | LN1 200511 P3 LR200509 0007 TCGGATTC BKDL202576219 1a AK692 1.fq.gz | 0:150 1:150 | A:2466410960;C:2177870985;G:2226887323;T:2463363578;N:151054 | 150 | 150 | 2466410960 | 2177870985 | 2226887323 | 2463363578 | 151054 | SRX9456907 | SRS7669367 | SRA1155868 | Zhejiang University of Technology|College of Environment | Zhejiang University of Technology | 2 | 0.93658 | 0.93772 | 0.06237 | 0.06259 | 0.76717 | 0.76846 | 0.51932 | 0.52468 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-11-08 | Adult | Adult | Liver | Liver and Biliary System |