run_metadata: 61792
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61792 | SRR13015658 | SRX9466578 | SRS7678740 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | olfactory bulb female replicate 1 | olfactory bulb female.rep1 | strain:AB wildtype|dev stage:adult|sex:female|tissue:olfactory bulb|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA Seq of zebrafish brain: adult female olfactory bulb Rep1 | 1f1 | 1f1 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | 1f1_S2_L005_R1_001.fastq.gz 1f1_S2_L005_R2_001.fastq.gz | fastq fastq | 4488167384.0 | 29527417.0 | 1f1 S2 L005 R1 001.fastq.gz | 0:76 1:76 | A:1098599616;C:1140262483;G:1121751579;T:1126722623;N:831083 | 76 | 76 | 1098599616 | 1140262483 | 1121751579 | 1126722623 | 831083 | SRX9466578 | SRS7678740 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.88472 | 0.88449 | 0.37687 | 0.37695 | 0.76108 | 0.76848 | 0.66177 | 0.6799 | 76 | 76 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Adult | Adult | Brain | Nervous System |