run_metadata: 61787
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61787 | SRR13015653 | SRX9466583 | SRS7678745 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | whole brain parents from cross 2 | female cross 2 adult brain | strain:AB wildtype|dev stage:adult|sex:female|tissue:whole brain|embryos derived by cross:single cross 2|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA seq whole brain zebrafish female from single cross 2 lane1 | PJ KH 031 1 | PJ KH 031 1 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | PJ_KH_031_S31_L003_R1_001.fastq.gz PJ_KH_031_S31_L003_R2_001.fastq.gz | fastq fastq | 6350750148.0 | 21028974.0 | PJ KH 031 S31 L003 R1 001.fastq.gz | 0:151 1:151 | A:1675304992;C:1501661441;G:1562756425;T:1610162778;N:864512 | 151 | 151 | 1675304992 | 1501661441 | 1562756425 | 1610162778 | 864512 | SRX9466583 | SRS7678745 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.86481 | 0.86713 | 0.09752 | 0.09568 | 0.69631 | 0.69901 | 0.50168 | 0.49985 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Adult | Adult | Brain | Nervous System |