run_metadata: 61782
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61782 | SRR13015648 | SRX9466588 | SRS7678747 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | body tissue of parents from cross 1 | female cross 1 adult body transcriptome | strain:AB wildtype|dev stage:adult|sex:female|tissue:body|embryos derived by cross:single cross 1|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA seq body zebrafish female from single cross 1 lane2 | PJ KH 033 2 | PJ KH 033 2 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | PJ_KH_033_S33_L004_R1_001.fastq.gz PJ_KH_033_S33_L004_R2_001.fastq.gz | fastq fastq | 6190583240.0 | 20498620.0 | PJ KH 033 S33 L004 R1 001.fastq.gz | 0:151 1:151 | A:1564701976;C:1533323455;G:1577799625;T:1513606117;N:1152067 | 151 | 151 | 1564701976 | 1533323455 | 1577799625 | 1513606117 | 1152067 | SRX9466588 | SRS7678747 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.95429 | 0.95588 | 0.02079 | 0.01982 | 0.75779 | 0.76065 | 0.44557 | 0.45493 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Adult | Adult | Trunk | Surface Structure |