run_metadata: 61772
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61772 | SRR13015630 | SRX9466606 | SRS7678758 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | cerebellum female replicate 2 | cerebellum female.rep2 | strain:AB wildtype|dev stage:adult|sex:female|tissue:cerebellum|biological replicate:replicate 2|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA Seq of zebrafish brain: adult male cerebellum Rep2 | 2f5 | 2f5 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | 2f5_S8_L005_R1_001.fastq.gz 2f5_S8_L005_R2_001.fastq.gz | fastq fastq | 4713828256.0 | 31012028.0 | 2f5 S8 L005 R1 001.fastq.gz | 0:76 1:76 | A:1197139755;C:1144383860;G:1143780145;T:1227643151;N:881345 | 76 | 76 | 1197139755 | 1144383860 | 1143780145 | 1227643151 | 881345 | SRX9466606 | SRS7678758 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.89227 | 0.8935 | 0.40787 | 0.40518 | 0.76664 | 0.77264 | 0.62466 | 0.6514 | 76 | 76 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Adult | Adult | Brain | Nervous System |