run_metadata: 61765
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61765 | SRR13015623 | SRX9466613 | SRS7678762 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | optic tectum female replicate 1 | optic tectum female.rep1 | strain:AB wildtype|dev stage:adult|sex:female|tissue:optic tectum|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA Seq of zebrafish brain: adult female optic tectum Rep1 | 1f3 | 1f3 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | 1f3_S9_L005_R1_001.fastq.gz 1f3_S9_L005_R2_001.fastq.gz | fastq fastq | 4946030296.0 | 32539673.0 | 1f3 S9 L005 R1 001.fastq.gz | 0:76 1:76 | A:1208781575;C:1261930618;G:1235784163;T:1238616764;N:917176 | 76 | 76 | 1208781575 | 1261930618 | 1235784163 | 1238616764 | 917176 | SRX9466613 | SRS7678762 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.90172 | 0.90352 | 0.39035 | 0.39306 | 0.75369 | 0.76108 | 0.64318 | 0.64239 | 76 | 76 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Adult | Adult | Brain | Nervous System |