run_metadata: 61764
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61764 | SRR13015622 | SRX9466614 | SRS7678763 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | zebrafish embryos 0 hpf | single cross 2 0hpf.rep1 | strain:AB wildtype|dev stage:0 hpf|sex:unknown|tissue:whole embryo|embryos derived by cross:single cross 2|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA seq of whole zebrafish embryos wildtype AB 0 hpf single cross 2 Rep1 lane2 | PJ KH 003 2 | PJ KH 003 2 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | PJ_KH_003_S3_L002_R1_001.fastq.gz PJ_KH_003_S3_L002_R2_001.fastq.gz | fastq fastq | 6323928622.0 | 20940161.0 | PJ KH 003 S3 L002 R1 001.fastq.gz | 0:151 1:151 | A:1664173214;C:1500258415;G:1538972894;T:1619319465;N:1204634 | 151 | 151 | 1664173214 | 1500258415 | 1538972894 | 1619319465 | 1204634 | SRX9466614 | SRS7678763 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.91771 | 0.91711 | 0.02141 | 0.02071 | 0.84382 | 0.84632 | 0.4721 | 0.47896 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Zygote | Embryo | Whole Organism | All anatomical structures |