run_metadata: 61758
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61758 | SRR13015616 | SRX9466620 | SRS7678766 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | zebrafish embryos 2 hpf | single cross 1 2hpf.rep2 | strain:AB wildtype|dev stage:2 hpf|sex:unknown|tissue:whole embryo|embryos derived by cross:single cross 1|biological replicate:replicate 2|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA seq of whole zebrafish embryos wildtype AB 2 hpf single cross 1 Rep2 lane2 | PJ KH 006 2 | PJ KH 006 2 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | PJ_KH_006_S6_L002_R1_001.fastq.gz PJ_KH_006_S6_L002_R2_001.fastq.gz | fastq fastq | 7858774464.0 | 26022432.0 | PJ KH 006 S6 L002 R1 001.fastq.gz | 0:151 1:151 | A:2009858271;C:1923713826;G:1960801975;T:1962908124;N:1492268 | 151 | 151 | 2009858271 | 1923713826 | 1960801975 | 1962908124 | 1492268 | SRX9466620 | SRS7678766 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.95405 | 0.95297 | 0.01503 | 0.01434 | 0.77632 | 0.77837 | 0.47453 | 0.47236 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Cleavage | Embryo | Whole Organism | All anatomical structures |