run_metadata: 61750
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61750 | SRR13015608 | SRX9466628 | SRS7678771 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | zebrafish embryos 4 hpf | single cross 1 4hpf.rep2 | strain:AB wildtype|dev stage:4 hpf|sex:unknown|tissue:whole embryo|embryos derived by cross:single cross 1|biological replicate:replicate 2|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA seq of whole zebrafish embryos wildtype AB 4 hpf single cross 1 Rep2 lane1 | PJ KH 010 1 | PJ KH 010 1 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | PJ_KH_010_S10_L001_R1_001.fastq.gz PJ_KH_010_S10_L001_R2_001.fastq.gz | fastq fastq | 7099993726.0 | 23509913.0 | PJ KH 010 S10 L001 R1 001.fastq.gz | 0:151 1:151 | A:1877827298;C:1670540865;G:1724999009;T:1824831113;N:1795441 | 151 | 151 | 1877827298 | 1670540865 | 1724999009 | 1824831113 | 1795441 | SRX9466628 | SRS7678771 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.94808 | 0.94566 | 0.03658 | 0.03564 | 0.74864 | 0.75132 | 0.47971 | 0.47662 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Blastula | Embryo | Whole Organism | All anatomical structures |