run_metadata: 61748
This data as json
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| 61748 | SRR13015606 | SRX9466630 | SRS7678772 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | zebrafish embryos 4 hpf | single cross 2 4hpf.rep1 | strain:AB wildtype|dev stage:4 hpf|sex:unknown|tissue:whole embryo|embryos derived by cross:single cross 2|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA seq of whole zebrafish embryos wildtype AB 4 hpf single cross 2 Rep1 lane1 | PJ KH 011 1 | PJ KH 011 1 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | PJ_KH_011_S11_L001_R1_001.fastq.gz PJ_KH_011_S11_L001_R2_001.fastq.gz | fastq fastq | 6636850754.0 | 21976327.0 | PJ KH 011 S11 L001 R1 001.fastq.gz | 0:151 1:151 | A:1775295087;C:1544162643;G:1601683778;T:1714026338;N:1682908 | 151 | 151 | 1775295087 | 1544162643 | 1601683778 | 1714026338 | 1682908 | SRX9466630 | SRS7678772 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.91734 | 0.91468 | 0.03236 | 0.03094 | 0.75597 | 0.7582 | 0.48541 | 0.48705 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Blastula | Embryo | Whole Organism | All anatomical structures |