run_metadata: 61712
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61712 | SRR13015570 | SRX9466666 | SRS7678790 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | whole brain parents from cross 1 | female cross 1 adult brain | strain:AB wildtype|dev stage:adult|sex:female|tissue:whole brain|embryos derived by cross:single cross 1|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA seq whole brain zebrafish female from single cross 1 lane2 | PJ KH 029 2 | PJ KH 029 2 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | PJ_KH_029_S29_L004_R1_001.fastq.gz PJ_KH_029_S29_L004_R2_001.fastq.gz | fastq fastq | 7450130412.0 | 24669306.0 | PJ KH 029 S29 L004 R1 001.fastq.gz | 0:151 1:151 | A:1969709863;C:1756017543;G:1788139547;T:1934886199;N:1377260 | 151 | 151 | 1969709863 | 1756017543 | 1788139547 | 1934886199 | 1377260 | SRX9466666 | SRS7678790 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.94617 | 0.94782 | 0.10955 | 0.10649 | 0.69532 | 0.69948 | 0.49163 | 0.50315 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Adult | Adult | Brain | Nervous System |