run_metadata: 61711
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61711 | SRR13015569 | SRX9466667 | SRS7678744 | SRP291905 | PRJNA674002 | A to I RNA editing in zebrafish during development | PRJNA674002 | Other | Here we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw unmapped sequencing output from stranded mRNA libraries can be found under this accession. | whole brain parents from cross 1 | male cross 1 adult brain | strain:AB wildtype|dev stage:adult|sex:male|tissue:whole brain|embryos derived by cross:single cross 1|assay type:mRNA seq|BioSampleModel:Model organism or animal | mRNA seq whole brain zebrafish male from single cross 1 lane1 | PJ KH 030 1 | PJ KH 030 1 | stranded mRNA | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP291905 | PJ_KH_030_S30_L003_R1_001.fastq.gz PJ_KH_030_S30_L003_R2_001.fastq.gz | fastq fastq | 6429727376.0 | 21290488.0 | PJ KH 030 S30 L003 R1 001.fastq.gz | 0:151 1:151 | A:1684299085;C:1528812483;G:1589785859;T:1625953978;N:875971 | 151 | 151 | 1684299085 | 1528812483 | 1589785859 | 1625953978 | 875971 | SRX9466667 | SRS7678744 | SRA1153075 | MDC Berlin|BIMSB | MDC Berlin | 2 | 0.9239 | 0.92493 | 0.09222 | 0.08938 | 0.68361 | 0.6854 | 0.49782 | 0.50548 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Germany | 2020-11-10 | Adult | Adult | Brain | Nervous System |