run_metadata: 61699

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
61699	SRR12964279	SRX9416872	SRS7632324	SRP290781	PRJNA673693	Global studies of soybean meal dietary in fish	PRJNA673693	Other	Intestinal transcriptome profile to evaluate dietary soybean meal tolerance favoring growth in adult zebrafish					HG		strain:family generated from TAB 5 DB 3 or AB\|isolate:null\|breed:zebrafish\|age:98 dpf stage:adult\|sex:male\|tissue:intestine\|biomaterial provider:Danio Biotech Company from Zebrafish for Innovation and Research ZIRLab Faculty of Sciences at University of Chile\|genotype:high w8 post a soy diet\|BioSampleModel:Model organism or animal									RNA Seq of zebrafish adult soy diet	3 7 R1	3 7 R1	RNA Seq libraries were constructed using TruSeq Stranded mRNA LT Sample Prep Kit following TruSeq Stranded mRNA Sample Preparation Guide Part #15031047 Rev. E. Briefly each sequencing library was prepared by random fragmentation of the DNA or cDNA sample followed by five prime and three prime adapter ligation. Alternatively "tagmentation" combines the fragmentation and ligation reactions into a single step that greatly increases the efficiency of the library preparation process. Adapter ligated fragments were then PCR amplified and gel purified. The fragments were sequenced with a read length of 151 base pairs using Illumina sequencing technology			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 1000		SRP290781			F3-7-GR_1.fastq.gz F3-7-GR_2.fastq.gz	fastq fastq	6885663118.0	22800209.0	F3 7 GR 1.fastq.gz	0:151 1:151	A:1812477779;C:1623127887;G:1690116325;T:1759914694;N:26433	151	151			1812477779	1623127887	1690116325	1759914694	26433	SRX9416872	SRS7632324	SRA1152184	Universidad de las Americas\|Facultad de Medicina Veterinaria y Agronomia	Universidad de las Americas	2	0.94927	0.95113	0.05683	0.05648	0.75191	0.7512	0.54881	0.52947	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	trueseq	bulk	unknown	unknown		Unknown	2020-11-02	Adult	Adult	Gut	Digestive System