run_metadata: 61657
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61657 | SRR12926111 | SRX9390273 | SRS7609571 | SRP289515 | PRJNA672972 | Transcriptome sequencing of CG1 zebrafish immune related tissues | PRJNA672972 | Other | CG1 is a homozygous diploid line of zebrafish. Due to the clonal nature of this line minimal genetic variation among individuals is expected. In anticipation of a draft genome for the CG1 line of zebrafish the research community may find value in transcriptome data from the same genetic background. Kidney intestine gills and spleen from six adult CG1 zebrafish were dissected and RNA from each tissue type was extracted Trizol Life Technologies. Equal amounts of RNA were pooled together prior to NGS library prep. | Danio rerio CG1 | strain:CG1|dev stage:adult|sex:not collected|tissue:kidney spleen liver intestine and gills|BioSampleModel:Model organism or animal | RNA seq of CG1 Danio rerio: immune related tissues | NO059 | NO059 | Equal amounts of RNA extracted from kidney spleen intestine liver and gills of six zebrafish were pooled prior to library prep and paired read sequencing via a NovaSeq 6000. | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP289515 | NS059_1.fq.gz NS059_2.fq.gz | fastq fastq | 6206095500.0 | 20686985.0 | NS059 1.fq.gz | 0:150 1:150 | A:1672977157;C:1431352025;G:1440567087;T:1661082893;N:116338 | 150 | 150 | 1672977157 | 1431352025 | 1440567087 | 1661082893 | 116338 | SRX9390273 | SRS7609571 | SRA1149693 | NCSU - CVM|Molecular Biomedical Sciences | NCSU - CVM | 2 | 0.94252 | 0.94204 | 0.05254 | 0.05253 | 0.71762 | 0.71798 | 0.4755 | 0.47719 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | United States | 2020-10-28 | Adult | Adult | Multi-tissue | Multi-system |