run_metadata: 61656
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61656 | SRR12903380 | SRX9368289 | SRS7590200 | SRP288657 | PRJNA672138 | RNA seq of zebrafish HSCs of cftr mutant at 48hpf | PRJNA672138 | Other | To reveal the role of cftr in HSC of zebrafish embryo at 48hpf | cmyb+GFP HSC | cmyb+GFP HSC | strain:AB|isolate:FACS|breed:Egg water|age:0.8year|dev stage:48hpf|sex:not applicable|tissue:HSC|cell line:HSC|cell type:HSC|collected by:FACS|BioSampleModel:Model organism or animal | RNA Seq of WT cmyb+GFP HSC | 1 | 1 | WT cmyb+GFP HSC | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | SINGLE | ILLUMINA | Illumina HiSeq 4000 | SRP288657 | WT-HSC_L4_Q802604.R1.fastq.gz WT-HSC_L4_Q802604.R2.fastq.gz | fastq fastq | 10530660600.0 | 35102202.0 | WT HSC L4 Q802604.R1.fastq.gz | 0:150 1:150 | A:2977953142;C:2283045134;G:2298868821;T:2970751970;N:41533 | 150 | 150 | 2977953142 | 2283045134 | 2298868821 | 2970751970 | 41533 | SRX9368289 | SRS7590200 | SRA1148101 | Sichuan University|West China Second University Hospital | Sichuan University | 2 | 0.93722 | 0.93625 | 0.21368 | 0.21331 | 0.72859 | 0.729 | 0.49389 | 0.49309 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-10-26 | Multi-stage | Multi-stage | Cell Line | Cell Line |