run_metadata: 61577
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61577 | SRR12876845 | SRX9342858 | SRS7564547 | SRP288136 | PRJNA670521 | Transcriptome sequencing of zebrafish Danio rerio gill tissue | PRJNA670521 | Other | Transcriptome sequencing of zebrafish Danio rerio gill tissue in response to microplastics | replicate 3 | gill | GA103 | isolate:missing|breed:zebrafish|age:more than 4 month|dev stage:adult|sex:pooled male and female|tissue:gill|treatment:50 μm MPs 10 days rep 3|BioSampleModel:Model organism or animal | Transcriptome sequencing of zebrafish Danio rerio gill tissue | GA103 | GA103 | Transcriptome sequencing of zebrafish Danio rerio gill tissue in response to microplastics | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP288136 | GA103_1.fq.gz GA103_2.fq.gz | fastq fastq | 5852867100.0 | 19509557.0 | GA103 1.fq.gz | 0:150 1:150 | A:1613843518;C:1306034750;G:1328364824;T:1604547905;N:76103 | 150 | 150 | 1613843518 | 1306034750 | 1328364824 | 1604547905 | 76103 | SRX9342858 | SRS7564547 | SRA1146301 | Ministry of Agriculture and Rural Affairs|Rural Energy and Environment Agency | Ministry of Agriculture and Rural Affairs | 2 | 0.88762 | 0.88673 | 0.13145 | 0.13183 | 0.68692 | 0.68858 | 0.50044 | 0.50102 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2020-10-22 | Adult | Adult | Gill | Respiratory System |