run_metadata: 61572
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61572 | SRR12876840 | SRX9342863 | SRS7564552 | SRP288136 | PRJNA670521 | Transcriptome sequencing of zebrafish Danio rerio gill tissue | PRJNA670521 | Other | Transcriptome sequencing of zebrafish Danio rerio gill tissue in response to microplastics | replicate 2 | gill | GC52 | isolate:missing|breed:zebrafish|age:more than 4 month|dev stage:adult|sex:pooled male and female|tissue:gill|treatment:300 μm MPs 5 days rep 2|BioSampleModel:Model organism or animal | Transcriptome sequencing of zebrafish Danio rerio gill tissue | GC52 | GC52 | Transcriptome sequencing of zebrafish Danio rerio gill tissue in response to microplastics | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP288136 | GC52_1.fq.gz GC52_2.fq.gz | fastq fastq | 7659995100.0 | 25533317.0 | GC52 1.fq.gz | 0:150 1:150 | A:2095841598;C:1728049655;G:1751039123;T:2084966530;N:98194 | 150 | 150 | 2095841598 | 1728049655 | 1751039123 | 2084966530 | 98194 | SRX9342863 | SRS7564552 | SRA1146301 | Ministry of Agriculture and Rural Affairs|Rural Energy and Environment Agency | Ministry of Agriculture and Rural Affairs | 2 | 0.89551 | 0.89201 | 0.12025 | 0.11984 | 0.68704 | 0.6887 | 0.49253 | 0.49124 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2020-10-22 | Adult | Adult | Gill | Respiratory System |