run_metadata: 61569
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61569 | SRR12876837 | SRX9342866 | SRS7564554 | SRP288136 | PRJNA670521 | Transcriptome sequencing of zebrafish Danio rerio gill tissue | PRJNA670521 | Other | Transcriptome sequencing of zebrafish Danio rerio gill tissue in response to microplastics | replicate 1 | gill | GA11 | isolate:missing|breed:zebrafish|age:more than 4 month|dev stage:adult|sex:pooled male and female|tissue:gill|treatment:50 μm MPs 1 days rep 1|BioSampleModel:Model organism or animal | Transcriptome sequencing of zebrafish Danio rerio gill tissue | GA11 | GA11 | Transcriptome sequencing of zebrafish Danio rerio gill tissue in response to microplastics | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP288136 | GA11_1.fq.gz GA11_2.fq.gz | fastq fastq | 8188340700.0 | 27294469.0 | GA11 1.fq.gz | 0:150 1:150 | A:2244984253;C:1843643944;G:1885403234;T:2214203077;N:106192 | 150 | 150 | 2244984253 | 1843643944 | 1885403234 | 2214203077 | 106192 | SRX9342866 | SRS7564554 | SRA1146301 | Ministry of Agriculture and Rural Affairs|Rural Energy and Environment Agency | Ministry of Agriculture and Rural Affairs | 2 | 0.8921 | 0.89037 | 0.11594 | 0.11574 | 0.69008 | 0.69175 | 0.49696 | 0.49028 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2020-10-22 | Adult | Adult | Gill | Respiratory System |