run_metadata: 61526
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61526 | SRR12858256 | SRX9325181 | SRS7549493 | SRP287979 | PRJNA668529 | Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 | PRJNA668529 | Other | Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq | Zebrafish Intranasal rSpike 3Hour | strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Hour|BioSampleModel:Model organism or animal | Single cell zebrafish olfactory organ: intranasal r Spike 3Hours | 3Hour 3 S11 | 3Hour 3 S11 | Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1 | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP287979 | 3Hour_3_S11_L004_R1_001.fastq.gz 3Hour_3_S11_L004_R2_001.fastq.gz | fastq fastq | 80705527190.0 | 267236845.0 | 3Hour 3 S11 L004 R1 001.fastq.gz | 0:151 1:151 | A:37985436560;C:12358793423;G:12237346212;T:18120396893;N:3554102 | 151 | 151 | 37985436560 | 12358793423 | 12237346212 | 18120396893 | 3554102 | SRX9325181 | SRS7549493 | SRA1141422 | University of New Mexico|Biology | University of New Mexico | 2 | 0.0 | 0.84472 | 0.0 | 0.22522 | 1.0 | 0.78293 | 0.57384 | 151 | 151 | T | B | mate1 technical by mapping diff | illumina | novaseq_era | unknown | random_priming | unknown | sc | single_cell_droplet | 10x | Mexico | 2020-10-21 | Adult | Adult | Brain | Nervous System |