run_metadata: 61422
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61422 | SRR12744939 | SRX9217396 | SRS7451218 | SRP285861 | PRJNA666534 | Transcriptomic analysis of the developmental toxicity of microplastics in zebrafish | PRJNA666534 | Other | This project was conduceted to explore the molecular mechanisms underlying the bioaccumulation depuration and developmental toxicity and immune dysfunction of microplastics in zebrafish larvae which provides novel insights into the ecological risks of MPs fragments. | PA H2O2 HA | strain:AB|dev stage:9 dpf|sex:pooled male and female|tissue:whole body|BioSampleModel:Model organism or animal | Transcriptomic analysis of the developmental toxicity of microplastics inzebrafish | PA H2O2 HA | PA H2O2 HA | mRNA of zebrafish tissue | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP285861 | PA_H2O2_HA.R1.fastq.gz PA_H2O2_HA.R2.fastq.gz | fastq fastq | 7307814724.0 | 24198062.0 | PA H2O2 HA.R1.fastq.gz | 0:151 1:151 | A:1916647803;C:1726826237;G:1763771127;T:1900498448;N:71109 | 151 | 151 | 1916647803 | 1726826237 | 1763771127 | 1900498448 | 71109 | SRX9217396 | SRS7451218 | SRA1135893 | Henan Normal University|College of Environment | Henan Normal University | 2 | 0.94168 | 0.91408 | 0.0715 | 0.06936 | 0.6872 | 0.69163 | 0.46735 | 0.47262 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-09-30 | Larval | Larval | Trunk | Surface Structure |