run_metadata: 60850
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60850 | SRR12578022 | SRX9064895 | SRS7314055 | SRP279884 | PRJNA661142 | microglia RNA sequence | PRJNA661142 | Other | we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression | sib ck 3 | strain:not applicable|isolate:sib ck 2 rep2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal | microglia RNA sequence | sib ck 3 | sib ck 3 | Flow | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP279884 | sib3-cK_R1.fq.gz sib3-cK_R2.fq.gz | fastq fastq | 5423170800.0 | 27115854.0 | sib3 cK R1.fq.gz | 0:100 1:100 | A:1572102733;C:1186819728;G:1171432686;T:1491096414;N:1719239 | 100 | 100 | 1572102733 | 1186819728 | 1171432686 | 1491096414 | 1719239 | SRX9064895 | SRS7314055 | SRA1120726 | southwest university|College of Life Science | southwest university | 2 | 0.92496 | 0.92715 | 0.13376 | 0.13838 | 0.849 | 0.85074 | 0.60089 | 0.60102 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-09-03 | Larval | Larval | Brain | Nervous System |