run_metadata: 60848
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60848 | SRR12578020 | SRX9064897 | SRS7314057 | SRP279884 | PRJNA661142 | microglia RNA sequence | PRJNA661142 | Other | we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression | mut ck 1 | strain:not applicable|isolate:photo converted red coro1a Kaede+ microglia were islated from mut zebrafish brain via Flow|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal | microglia RNA sequence | mut ck 1 | mut ck 1 | Flow | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP279884 | mut1-cK_R1.fq.gz mut1-cK_R2.fq.gz | fastq fastq | 4583500600.0 | 22917503.0 | mut1 cK R1.fq.gz | 0:100 1:100 | A:1287013718;C:1036294088;G:1027392742;T:1230916656;N:1883396 | 100 | 100 | 1287013718 | 1036294088 | 1027392742 | 1230916656 | 1883396 | SRX9064897 | SRS7314057 | SRA1120726 | southwest university|College of Life Science | southwest university | 2 | 0.93123 | 0.93277 | 0.0796 | 0.08122 | 0.85616 | 0.85608 | 0.56879 | 0.56531 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-09-03 | Larval | Larval | Brain | Nervous System |