run_metadata: 60843
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60843 | SRR12569150 | SRX9057253 | SRS7306636 | SRP279716 | PRJNA660936 | neuron RNA sequence | PRJNA660936 | Other | exploring the transcriptome difference of wt and V10 mutant zebrafish brain neuron | hg cq55 3 | strain:not applicable|isolate:neuron cells from cq55 zebrafish brain|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal | neuron RNA sequence | hg cq55 3 | hg cq55 3 | Flow | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP279716 | mut1_3dpf_huC_GFP_R1.fq.gz mut1_3dpf_huC_GFP_R2.fq.gz | fastq fastq | 5327979250.0 | 21311917.0 | mut1 3dpf huC GFP R1.fq.gz | 0:125 1:125 | A:1718961802;C:967989219;G:966412948;T:1674354049;N:261232 | 125 | 125 | 1718961802 | 967989219 | 966412948 | 1674354049 | 261232 | SRX9057253 | SRS7306636 | SRA1120054 | southwest university|College of Life Science | southwest university | 2 | 0.86362 | 0.86453 | 0.37415 | 0.37612 | 0.80101 | 0.80277 | 0.54685 | 0.54842 | 125 | 125 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-09-02 | Larval | Larval | Brain | Nervous System |