run_metadata: 60823
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60823 | SRR12494407 | SRX8985926 | SRS7239898 | SRP278434 | PRJNA658611 | zebrafish starvation stress | PRJNA658611 | Other | RNA Seq Analysis Reveals the Molecular Response Mechanisms in Zebrafish Larvae Undergoing Starvation During the Mouth opening Stage | sszf | strain:AB line|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:8 days|dev stage:larval fish|sex:not determined|tissue:not collected|BioSampleModel:Model organism or animal | Transcriptome analysis reveals the role of exogenous feeding in regulating antioxidant defenses during the mouth opening stage in zebrafish larvae | 821 | 821 | RNA sequencing | WGS | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP278434 | Starved2-R2.R2.clean.fastq.gz Starved2-R1.R1.clean.fastq.gz Starved1-R2.R2.clean.fastq.gz Starved1-R1.R1.clean.fastq.gz Control2-R2.R2.clean.fastq.gz Control2-R1.R1.clean.fastq.gz Control1-R2.R2.clean.fastq.gz Control1-R1.R1.clean.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq | 11815834250.0 | 47263337.0 | Control1 R1.R1.clean.fastq.gz | 0:125 1:125 | A:2985063485;C:2935671076;G:2921346976;T:2973732805;N:19908 | 125 | 125 | 2985063485 | 2935671076 | 2921346976 | 2973732805 | 19908 | SRX8985926 | SRS7239898 | SRA1115895 | Southwest University|College of Animal Science and Technolgoy | Southwest University | 2 | 0.9663 | 0.96526 | 0.05986 | 0.06116 | 0.70889 | 0.71108 | 0.50789 | 0.50441 | 125 | 125 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-08-21 | Larval | Larval | Undetermined | Undetermined |