run_metadata: 60678
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60678 | SRR12474680 | SRX8968702 | SRS7224439 | SRP278034 | PRJNA657343 | Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development | PRJNA657343 | Other | Comprehensive integration of transcriptome genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program. | Quantseq 14som SATB2 MUT BR1 | Quantseq 14som SATB2 MUT Rep1 | strain:TU|isolate:Satb2 mutant|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 hpf|dev stage:14 somites|sex:not applicable|tissue:whole embryo|Replicate:replicate=14som SATB2 MUT Rep1|BioSampleModel:Model organism or animal | Quantseq 14som SATB2 MUT BR1 | Quantseq 14som SATB2 MUT Rep1 | Quantseq 14som SATB2 MUT Rep1 | 3 mRNA seq | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | NextSeq 550 | SRP278034 | Quantseq_14som_SATB2_MUT_Rep1.fastq.gz | fastq | 714114566.0 | 9480391.0 | Quantseq 14som SATB2 MUT Rep1.fastq.gz | 0:75.33 1:0 | A:214876091;C:138572440;G:176756219;T:183862261;N:47555 | 75 | 0 | 214876091 | 138572440 | 176756219 | 183862261 | 47555 | SRX8968702 | SRS7224439 | SRA1114017 | IISER-PUNE|biology | IISER-PUNE | 1 | 0.53567 | 0.06484 | 0.84618 | 0.64745 | 76 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | unknown | bulk | unknown | unknown | India | 2020-08-19 | Segmentation | Embryo | Whole Organism | All anatomical structures |