run_metadata: 60664
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60664 | SRR12474623 | SRX8968759 | SRS7224496 | SRP278034 | PRJNA657343 | Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development | PRJNA657343 | Other | Comprehensive integration of transcriptome genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program. | RNAseq Dome Satb2 Momix BR2 | RNAseq Dome Satb2 Momix Rep2 | strain:TU|isolate:Satb2 MO|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:4.5 hpf|dev stage:Dome|sex:not applicable|tissue:whole embryo|Replicate:replicate=Dome Satb2 Momix Rep2|BioSampleModel:Model organism or animal | RNAseq Dome Satb2 Momix BR2 | RNAseq Dome Satb2 Momix Rep2 | RNAseq Dome Satb2 Momix Rep2 | poly A isolation | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP278034 | RNAseq_Dome_Satb2_Momix_Rep2_1.fastq.gz RNAseq_Dome_Satb2_Momix_Rep2_2.fastq.gz | fastq fastq | 2934600046.0 | 14527723.0 | RNAseq Dome Satb2 Momix Rep2 1.fastq.gz | 0:101 1:101 | A:765684715;C:691595256;G:707084290;T:769474179;N:761606 | 101 | 101 | 765684715 | 691595256 | 707084290 | 769474179 | 761606 | SRX8968759 | SRS7224496 | SRA1114017 | IISER-PUNE|biology | IISER-PUNE | 2 | 0.92974 | 0.93883 | 0.07845 | 0.0785 | 0.72592 | 0.72671 | 0.4882 | 0.48052 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | India | 2020-08-19 | Blastula | Embryo | Whole Organism | All anatomical structures |