run_metadata: 60657
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60657 | SRR15046102 | SRX11356738 | SRS9403587 | SRP278034 | PRJNA657343 | Satb2 acts as a gatekeeper for gene regulatory transitions during early embryonic development | PRJNA657343 | Other | Comprehensive integration of transcriptome genome wide occupancy and chromatin accessibility profiles in satb2 loss of function and gain of function systems to discover novel and evolutionary conserved molecular interplays between Satb2 and the genetic drivers of neurogenesis and neural crest development program. | scRNAseq | scRNAseq Satb2 MUT 14som | scRNAseq Satb2 MUT 14som | strain:Satb2 Mutant|age:14 somite|dev stage:14 somite|sex:not applicable|tissue:whole embryo|replicate:replicate = Biological replicate1|BioSampleModel:Model organism or animal | Satb2 mutants single cell RNAseq | Satb2 MUT 14ss scRNAseq | Satb2 MUT 14ss scRNAseq | according 10X three primemRNA seq V3.2 protocol | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | Oligo-dT | PAIRED | ILLUMINA | NextSeq 550 | SRP278034 | loader:fastq load.py | 23142978710.0 | 177123922.0 | scRNAseq Satb2 MUT 14som I1.fastq.gz | 0:8 1:30 2:92.66 | A:4753575949;C:3375880000;G:3751151628;T:4500225651;N:31436446 | 8 | 30 | 92 | 4753575949 | 3375880000 | 3751151628 | 4500225651 | 31436446 | SRX11356738 | SRS9403587 | SRA1254741 | IISER-PUNE|biology | IISER-PUNE | 1 | 0.80351 | 0.14479 | 0.79695 | 0.55274 | 101 | B | usable mapping rate | illumina | nextseq | unknown | poly_a | unknown | sc | single_cell_droplet | 10x | India | 2021-07-13 | Segmentation | Embryo | Whole Organism | All anatomical structures |