run_metadata: 60599
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60599 | SRR12432918 | SRX8928709 | SRS7184991 | SRP277140 | PRJNA656674 | EGFR mutant Danio rerio ovary raw sequence reads | PRJNA656674 | Whole Genome Sequencing | The ovaries of 45 dpf zebrafish were separated. Transcriptome analysis between EGFR mutant and wildtype zebrafish was conducted in this project. | The zebrafish ovaries isolated from 45 dpf female were analyzed. | Ovary of 45 dpf Danio rerio | zebrafish | strain:AB|age:45 dpf|dev stage:puberty|sex:female|tissue:ovary|BioSampleModel:Model organism or animal | WT2 | 5 | 5 | common method | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina iSeq 100 | SRP277140 | egfraWT2_1.fq.gz egfraWT2_2.fq.gz | fastq fastq | 4505046300.0 | 15016821.0 | egfraWT2 1.fq.gz | 0:150 1:150 | A:1178064156;C:1082694104;G:1073742824;T:1169756132;N:789084 | 150 | 150 | 1178064156 | 1082694104 | 1073742824 | 1169756132 | 789084 | SRX8928709 | SRS7184991 | SRA1111906 | Faculty of Health Sciences, University of Macau|Centre of Reproduction, Development and Aging | Faculty of Health Sciences, University of Macau | 2 | 0.89561 | 0.8985 | 0.02356 | 0.02385 | 0.74383 | 0.74953 | 0.47901 | 0.47332 | 150 | 150 | B | B | biological fallback assumption | illumina | miseq | unknown | other | unknown | bulk | unknown | unknown | China | 2020-08-12 | Juvenile | Juvenile | Gonad | Reproductive System |