run_metadata: 60550
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60550 | SRR12342828 | SRX8842536 | SRS7105601 | SRP274071 | PRJNA649399 | zebrafish 5 dpf sequencing | PRJNA649399 | Other | For a more comprehensive analysis for the role of oxr1a on zebrafish for protection against oxidative stress | WT CTRL | strain:no|isolate:without|breed:AB line|cultivar:1|ecotype:2|age:5 dpf|dev stage:larval|sex:male|tissue:whole fish|BioSampleModel:Model organism or animal | whole fish | 729729 | 729729 | AB line gene knockout | WGS | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP274071 | WT_ctrl1 WT_ctrl2 | fastq fastq | 2795932250.0 | 11183729.0 | WT ctrl1.gz | 0:125 1:125 | A:714170507;C:687382036;G:684930011;T:709446720;N:2976 | 125 | 125 | 714170507 | 687382036 | 684930011 | 709446720 | 2976 | SRX8842536 | SRS7105601 | SRA1105186 | Southwest University|College of Animal Science and Technolgoy | Southwest University | 2 | 0.96284 | 0.9622 | 0.06398 | 0.06785 | 0.70276 | 0.70179 | 0.50363 | 0.50583 | 125 | 125 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-07-29 | Larval | Larval | Whole Organism | All anatomical structures |