run_metadata: 60023
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60023 | SRR12103086 | SRX8627420 | SRS6915729 | SRP269070 | PRJNA642405 | Changes of m6A RNA methylation following spinal cord injury | PRJNA642405 | Other | Results of methylation profiling by MeRIP Seq in both control and larvae with spinal cord injury | Control IP | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:trunk|sample type:Control IP|BioSampleModel:Model organism or animal | IP library sequencing data of control sample | controlIP BKDL192540808 1a | controlIP BKDL192540808 1a | IP library sequencing data of control sample | RIP-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | HiSeq X Ten | SRP269070 | controlIP_BKDL192540808-1a_2.fq.gz controlIP_BKDL192540808-1a_1.fq.gz | fastq fastq | 7359972600.0 | 24533242.0 | controlIP BKDL192540808 1a 1.fq.gz | 0:150 1:150 | A:1569051886;C:2002692591;G:2333418000;T:1454676484;N:133639 | 150 | 150 | 1569051886 | 2002692591 | 2333418000 | 1454676484 | 133639 | SRX8627420 | SRS6915729 | SRA1091926 | Nantong University|Key Laboratory of Neuroregeneration of Jiangsu and | Nantong University | 2 | 0.92004 | 0.92293 | 0.20272 | 0.20739 | 0.83254 | 0.83291 | 0.68471 | 0.65224 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-06-28 | Undetermined | Larval | Trunk | Surface Structure |