run_metadata: 60016
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60016 | SRR12113709 | SRX8636214 | SRS6922579 | SRP269298 | PRJNA641991 | Zebrafish intestinal transcriptome | PRJNA641991 | Other | The model of streptococcus agalactiae infection in zebrafish was established and transcriptomic analysis of gut was carried out revealing the molecular mechanism of gut as immune organ in antibacterial immunity. | Drc3 | strain:Streptococcus agalactiae|age:adult|sex:male|tissue:gut|BioSampleModel:Model organism or animal | RNA Seq of zebrafish: adult gut transcriptome | Drc3 | Drc3 | Analysis of the gut transcriptome zebrafish | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP269298 | Drc3_2.fq.gz Drc3_1.fq.gz | fastq fastq | 10383694880.0 | 103837934.0 | Drc3 1.fq.gz | 0:100.00 1:100.00 | A:2753661855;C:2428450083;G:2392575550;T:2804447481;N:4559911 | 100 | 100 | 2753661855 | 2428450083 | 2392575550 | 2804447481 | 4559911 | SRX8636214 | SRS6922579 | SRA1092419 | Kunming University of Science and Technology|faculty of life science and technology | Kunming University of Science and Technology | 1 | 0.93644 | 0.04044 | 0.72277 | 0.40342 | 100 | B | usable mapping rate | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2020-06-30 | Adult | Adult | Gut | Digestive System |