run_metadata: 59958
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59958 | SRR12070755 | SRX8598386 | SRS6888921 | SRP268341 | PRJNA641144 | Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA Seq] | GSE152998 | Transcriptome Analysis | We report single cell gene expression profiling of the zebrafish melanoma cell lines ZMEL1 PRO and ZMEL1 INV under multiple in vitro and in vivo zebrafish transplant conditions Overall design: Single cell RNA seq of ZMEL1 PRO and ZMEL1 INV cells in one of four conditions: 1 in vitro individual culture; 2 in vitro co culture; 3 in vivo primary tumors; and 4 in vivo metastases | parent bioproject:PRJNA636815 | pubmed:34529939 | InVivoMetINV M INV | GSM4632817 | tissue:Zebrafish melanoma cell line|cell line:ZMEL INV GFP|cell type:Zebrafish melanoma | InVivoMetINV M INV | Cell ranger 3.1.0 Seurat v3 Genome build: GRCz10 Ensembl version 81 Supplementary files format and content: csv | Zebrafish melanoma cell line | none provided by the submitter | cell line:ZMEL INV GFP|cell type:Zebrafish melanoma | GSM4632817 | GSM4632817: InVivoMetINV M INV; Danio rerio; RNA Seq | GSM4632817 | 1 | none provided by the submitter | GEO Accession:GSM4632817 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | NextSeq 500 | SRP268341 | BS04344A_S11_L001_R2_001.fastq.gz BS04344A_S11_L001_R1_001.fastq.gz | fastq fastq | 1731535764.0 | 20613521.0 | GSM4632817 r7 | 0:28 1:56 | A:457782608;C:405667922;G:420736879;T:446815219;N:533136 | 28 | 56 | 457782608 | 405667922 | 420736879 | 446815219 | 533136 | SRX8598386 | SRS6888921 | SRA1089858 | GEO | Memorial Sloan Kettering Cancer Center | 2 | 0.00744 | 0.93716 | 0.00248 | 0.11446 | 0.99109 | 0.82022 | 0.33439 | 0.51744 | 28 | 56 | T | B | sc-like readlen | illumina | nextseq | unknown | cdna_unspecified | unknown | sc_generic | single_cell_generic | generic-scrnaseq-only | United States | 2020-06-22 | Undetermined | Undetermined | Cancer or Tumor | Cancer or Tumor |